Publications

Go to past years:

2009

von Nandelstadh P, Ismail M, Gardin C, et al. (2009) A class III PDZ binding motif in the myotilin and FATZ families binds enigma family proteins: a common link for Z-disc myopathies Mol Cell Biol. 29(3):822-34. Pubmed.

Cagnin S, Biscuola M, Patuzzo C, et al. (2009) Reconstruction and functional analysis of altered molecular pathways in human atherosclerotic arteries BMC Genomics. 10:13. Pubmed.

Feltrin E, Campanaro S, Diehl AD, et al. (2009) Muscle Research and Gene Ontology: New standards for improved data integration BMC Med Genomics. 2:6. Pubmed.

Mero A, Spolaore B, Veronese FM, Fontana A. (2009) Transglutaminase-mediated PEGylation of proteins: direct identification of the sites of protein modification by mass spectrometry using a novel monodisperse PEG Bioconjug Chem. 20(2):384-9. Pubmed.

Venier P, De Pittà C, Bernante F, et al. (2009) MytiBase: a knowledgebase of mussel (M. galloprovincialis) transcribed sequences BMC Genomics. 10:72. Pubmed.

Campagna D, Albiero A, Bilardi A, et al. (2009) PASS: a program to align short sequences. Bioinformatics. 25:967-8. Pubmed.

Cozzarini E, Bellin M, Norberto L, et al. (2009) CHIT1 and AMCase expression in human gastric mucosa: correlation with inflammation and Helicobacter pylori infection Eur J Gastroenterol Hepatol. 21(10):1119-26. Pubmed.

Millino C, Fanin M, Vettori A, et al. (2009) Different atrophy-hypertrophy transcription pathways in muscles affected by severe and mild spinal muscular atrophy Bio Med. 7:14. Pubmed.

Frare E, Mossuto MF, de Laureto PP, et al. (2009) Characterization of oligomeric species on the aggregation pathway of human lysozyme J Mol Biol. 387(1):17-27. Pubmed.

Silic-Benussi M, Cannizzaro E, Venerando A, et al. (2009) Modulation of mitochondrial K(+) permeability and reactive oxygen species production by the p13 protein of human T-cell leukemia virus type 1 Biochim Biophys Acta. 1787(7):947-54. Pubmed.

Tavano R, Franzoso S, Cecchini P, et al. (2009) The membrane expression of Neisseria meningitidis adhesin A (NadA) increases the proimmune effects of MenB OMVs on human macrophages, compared with NadA- OMVs, without further stimulating their proinflammatory activity on circulating monocytes J Leukoc Biol. 86(1):143-53. Pubmed.

Romualdi C, Giuliani A, Millino C, et al. (2009) Correlation between gene expression and clinical data through linear and nonlinear principal components analyses: muscular dystrophies as case studies OMICS. 13(3):173-84. Pubmed.

Pecorari L, Marin O, Silvestri C, et al. (2009) Elongation Factor 1 alpha interacts with phospho-Akt in breast cancer cells and regulates their proliferation, survival and motility Mol Cancer. 8:58. Pubmed.

Codutti L, Picotti P, Marin O, et al. (2009) Conformational stability of neuroglobin helix F--possible effects on the folding pathway within the globin family FEBS J. 276(18):5177-90. Pubmed.

2008

Fontana A, Spolaore B, Mero A, Veronese FM. (2008) Site-specific modification and PEGylation of pharmaceutical proteins mediated by transglutaminase Adv Drug Deliv Rev. 60(1):13-28. Pubmed.

Zhang C, Crasta O, Cammer S, et al. (2008) An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data. Nucleic Acids Res. Database issue.36:D884-91. Pubmed.

Gene Ontology Consortium. (2008) The Gene Ontology project in 2008. Nucleic Acids Res. 36:D440-4. Pubmed.

Lauro FM, Tran K, Vezzi A, et al. (2008) Large-scale transposon mutagenesis of Photobacterium profundum SS9 reveals new genetic loci important for growth at low temperature and high pressure J Bacteriol. 190(5):1699-709. Pubmed.

De Pittà C, Bertolucci C, Mazzotta GM, et al. (2008) Systematic sequencing of mRNA from the Antarctic krill (Euphausia superba) and first tissue specific transcriptional signature BMC Genomics. 9:45. Pubmed.

Todesco S, Campagna D, Levorin F, et al. (2008) PABS: an online platform to assist BAC-by-BAC sequencing projects BioTechniques. 44(1):60, 62, 64. Pubmed.

Franzoso S, Mazzon C, Sztukowska M, et al. (2008) Human monocytes/macrophages are a target of Neisseria meningitidis Adhesin A (NadA) J Leukoc Biol. 83(5):1100-10. Pubmed.

Bean C, Facchinello N, Faulkner G, Lanfranchi G. (2008) The effects of Ankrd2 alteration indicate its involvement in cell cycle regulation during muscle differentiation Biochim Biophys Acta. 1783(6):1023-35. Pubmed.

Chiara F, Castellaro D, Marin O, et al. (2008) Hexokinase II detachment from mitochondria triggers apoptosis through the permeability transition pore independent of voltage-dependent anion channels PLoS ONE. 3(3):e1852. Pubmed.

Manavski SA, Valle G. (2008) CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment BMC Bioinformatics. 9 Suppl 2:S10. Pubmed.

Coccetti P, Tripodi F, Tedeschi G, et al. (2008) The CK2 phosphorylation of catalytic domain of Cdc34 modulates its activity at the G1 to S transition in Saccharomyces cerevisiae Cell Cycle. 7(10):1391-401. Pubmed.

Campioni S, Mossuto MF, Torrassa S, et al. (2008) Conformational properties of the aggregation precursor state of HypF-N J Mol Biol. 379(3):554-67. Pubmed.

Sbroggiò M, Ferretti R, Percivalle E, et al. (2008) The mammalian CHORD-containing protein melusin is a stress response protein interacting with Hsp90 and Sgt1 FEBS Lett. 582(13):1788-94. Pubmed.

Pagano MA, Arrigoni G, Marin O, et al. (2008) Modulation of protein kinase CK2 activity by fragments of CFTR encompassing F508 may reflect functional links with cystic fibrosis pathogenesis Biochemistry. 47(30):7925-36. Pubmed.

Poletto G, Vilardell J, Marin O, et al. (2008) The regulatory beta subunit of protein kinase CK2 contributes to the recognition of the substrate consensus sequence. A study with an eIF2 beta-derived peptide Biochemistry. 47(32):8317-25. Pubmed.

Montalbàn-Lòpez M, Spolaore B, Pinato O, et al. (2008) Characterization of linear forms of the circular enterocin AS-48 obtained by limited proteolysis FEBS Lett. 582(21-22):3237-42. Pubmed.

Cenni V, Bertacchini J, Beretti F, et al. (2008) Lamin A Ser404 is a nuclear target of Akt phosphorylation in C2C12 cells J Proteome Res. 7(11):4727-35. Pubmed.

Campanaro S, Treu L, Valle G. (2008) Protein evolution in deep sea bacteria: an analysis of amino acids substitution rates BMC Evol Biol. 8:313. Pubmed.

Denoeud F, Aury JM, Da Silva C, et al. (2008) Annotating genomes with massive-scale RNA sequencing Genome Biol. 9(12):R175. Pubmed.

Calura E, Cagnin S, Raffaello A, et al. (2008) Meta-analysis of expression signatures of muscle atrophy: gene interaction networks in early and late stages BMC Genomics. 9:630. Pubmed.

2007

Settimo L, Donnini S, Juffer AH, et al. (2007) Conformational changes upon calcium binding and phosphorylation in a synthetic fragment of calmodulin Biopolymers. 88(3):373-85. Pubmed.

Picotti P, De Franceschi G, Frare E, et al. (2007) Amyloid fibril formation and disaggregation of fragment 1-29 of apomyoglobin: insights into the effect of pH on protein fibrillogenesis J Mol Biol. 367(5):1237-45. Pubmed.

Vitulo N, Vezzi A, Romualdi C, et al. (2007) A global gene evolution analysis on Vibrionaceae family using phylogenetic profile BMC Bioinformatics. 8 Suppl 1:S23. Pubmed.

Galietta A, Gunby RH, Redaelli S, et al. (2007) NPM/ALK binds and phosphorylates the RNA/DNA-binding protein PSF in anaplastic large-cell lymphoma Blood. 110(7):2600-9. Pubmed.

De Filippis V, Draghi A, Frasson R, et al. (2007) o-Nitrotyrosine and p-iodophenylalanine as spectroscopic probes for structural characterization of SH3 complexes Protein Sci. 16(7):1257-65. Pubmed.

Jaillon O, Aury JM, Noel B, et al. (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla Nature. 449(7161):463-7. Pubmed.

Monsellier E, Ramazzotti M, de Laureto PP, et al. (2007) The distribution of residues in a polypeptide sequence is a determinant of aggregation optimized by evolution Biophys J. 93(12):4382-91. Pubmed.

Mazzon C, Baldani-Guerra B, Cecchini P, et al. (2007) IFN-gamma and R-848 dependent activation of human monocyte-derived dendritic cells by Neisseria meningitidis adhesin A J Immunol. 179(6):3904-16. Pubmed.

Ferrarese A, Marin O, Bustos VH, et al. (2007) Chemical dissection of the APC Repeat 3 multistep phosphorylation by the concerted action of protein kinases CK1 and GSK3 Biochemistry. 46(42):11902-10. Pubmed.

Dal Pero F, Di Maira G, Marin O, et al. (2007) Heterogeneity of CK2 phosphorylation sites in the NS5A protein of different hepatitis C virus genotypes J Hepatol. 47(6):768-76. Pubmed.

Campanaro S, Picelli S, Torregrossa R, et al. (2007) Genes involved in TGF beta1-driven epithelial-mesenchymal transition of renal epithelial cells are topologically related in the human interactome map BMC Genomics. 8:383. Pubmed.

Beffagna G, De Bortoli M, Nava A, et al. (2007) Missense mutations in desmocollin-2 N-terminus, associated with arrhythmogenic right ventricular cardiomyopathy, affect intracellular localization of desmocollin-2 in vitro BMC Med Genet. 8:65. Pubmed.

2006

Tosatto SC, Giacometti GM, Valle G, Costantini P. (2006) Functional insights from the structural modelling of a small Fe-hydrogenase Biochem Biophys Res Commun. 339(1):277-83. Pubmed.

Raffaello A, Laveder P, Romualdi C, et al. (2006) Denervation in murine fast-twitch muscle: short-term physiological changes and temporal expression profiling Physiol Genomics. 25(1):60-74. Pubmed.

De Pittà C, Tombolan L, Albiero G, et al. (2006) Gene expression profiling identifies potential relevant genes in alveolar rhabdomyosarcoma pathogenesis and discriminates PAX3-FKHR positive and negative tumors Int J Cancer. 118(11):2772-81. Pubmed.

Forner F, Foster LJ, Campanaro S, et al. (2006) Quantitative proteomic comparison of rat mitochondria from muscle, heart, and liver Mol Cell Proteomics. 5(4):608-19. Pubmed.

Buttino I, De Rosa G, Carotenuto Y, et al. (2006) Giant liposomes as delivery system for ecophysiological studies in copepods J Exp Biol. 209(Pt 5):801-9. Pubmed.

Carelli V, Achilli A, Valentino ML, et al. (2006) Haplogroup effects and recombination of mitochondrial DNA: novel clues from the analysis of Leber hereditary optic neuropathy pedigrees Am J Hum Genet. 78(4):564-74. Pubmed.

De Filippis V, Frasson R, Fontana A. (2006) 3-Nitrotyrosine as a spectroscopic probe for investigating protein protein interactions Protein Sci. 15(5):976-86. Pubmed.

Albiero A, Tosatto SC. (2006) Fine-grained statistical torsion angle potentials are effective in discriminating native protein structures Curr Drug Discov Technol. 3(1):75-81. Pubmed.

Coccetti P, Zinzalla V, Tedeschi G, et al. (2006) Sic1 is phosphorylated by CK2 on Ser201 in budding yeast cells Biochem Biophys Res Commun. 346(3):786-93. Pubmed.

Simonato F, Campanaro S, Lauro FM, et al. (2006) Piezophilic adaptation: a genomic point of view J Biotechnol. 126(1):11-25. Pubmed.

Furlan S, Roncaroli F, Forner F, et al. (2006) The LGI1/epitempin gene encodes two protein isoforms differentially expressed in human brain J Neurochem. 98(3):985-91. Pubmed.

Salvi M, Sarno S, Marin O, et al. (2006) Discrimination between the activity of protein kinase CK2 holoenzyme and its catalytic subunits FEBS Lett. 580(16):3948-52. Pubmed.

Frare E, Mossuto MF, Polverino de Laureto P, et al. (2006) Identification of the core structure of lysozyme amyloid fibrils by proteolysis J Mol Biol. 361(3):551-61. Pubmed.

de Laureto PP, Tosatto L, Frare E, et al. (2006) Conformational properties of the SDS-bound state of alpha-synuclein probed by limited proteolysis: unexpected rigidity of the acidic C-terminal tail Biochemistry. 45(38):11523-31. Pubmed.

Venier P, De Pittà C, Pallavicini A, et al. (2006) Development of mussel mRNA profiling: Can gene expression trends reveal coastal water pollution? Mutat Res. 602(1-2):121-34. Pubmed.

Millino C, Bellin M, Fanin M, et al. (2006) Expression profiling characterization of laminin alpha-2 positive MDC Biochem Biophys Res Commun. 350(2):345-51. Pubmed.

Celegato B, Capitanio D, Pescatori M, et al. (2006) Parallel protein and transcript profiles of FSHD patient muscles correlate to the D4Z4 arrangement and reveal a common impairment of slow to fast fibre differentiation and a general deregulation of MyoD-dependent genes Proteomics. 6(19):5303-21. Pubmed.

Nanni L, Romualdi C, Maseri A, Lanfranchi G. (2006) Differential gene expression profiling in genetic and multifactorial cardiovascular diseases J Mol Cell Cardiol. 41(6):934-48. Pubmed.

Tavano R, Contento RL, Baranda SJ, et al. (2006) CD28 interaction with filamin-A controls lipid raft accumulation at the T-cell immunological synapse Nat Cell Biol. 8(11):1270-6. Pubmed.

Romualdi C, De Pittà C, Tombolan L, et al. (2006) Defining the gene expression signature of rhabdomyosarcoma by meta-analysis BMC Genomics. 7:287. Pubmed.

Bustos VH, Ferrarese A, Venerando A, et al. (2006) The first armadillo repeat is involved in the recognition and regulation of beta-catenin phosphorylation by protein kinase CK1 Proc Natl Acad Sci USA. 103(52):19725-30. Pubmed.

Tosatto SC, Albiero A, Mantovan A, et al. (2006) Align: a C++ class library and web server for rapid sequence alignment prototyping Curr Drug Discov Technol. 3(3):167-73. Pubmed.

2005

Campagna D, Romualdi C, Vitulo N, et al. (2005) RAP: a new computer program for de novo identification of repeated sequences in whole genomes Bioinformatics. 21(5):582-8. Pubmed.

Vezzi A, Campanaro S, D'Angelo M, et al. (2005) Life at depth: Photobacterium profundum genome sequence and expression analysis Science. 307(5714):1459-61. Pubmed.

Bean C, Salamon M, Raffaello A, et al. (2005) The Ankrd2, Cdkn1c and calcyclin genes are under the control of MyoD during myogenic differentiation J Mol Biol. 349(2):349-66. Pubmed.

Bianchi M, De Lucchini S, Marin O, et al. (2005) Regulation of FAK Ser-722 phosphorylation and kinase activity by GSK3 and PP1 during cell spreading and migration Biochem J. 391(Pt 2):359-70. Pubmed.

Romualdi C, Vitulo N, Del Favero M, Lanfranchi G. (2005) MIDAW: a web tool for statistical analysis of microarray data Nucleic Acids Res. 33(Web Server issue):W644-9. Pubmed.

De Pittà C, Tombolan L, Campo Dell'Orto M, et al. (2005) A leukemia-enriched cDNA microarray platform identifies new transcripts with relevance to the biology of pediatric acute lymphoblastic leukemia Haematologica. 90(7):890-8. Pubmed.

Ferrari S, Marin O, Pagano MA, et al. (2005) Aurora-A site specificity: a study with synthetic peptide substrates Biochem J. 390(Pt 1):293-302. Pubmed.

Frare E, de Laureto PP, Scaramella E, et al. (2005) Chemical synthesis of the RGD-protein decorsin: Pro-->Ala replacement reduces protein thermostability Protein Eng Des Sel. 18(10):487-95. Pubmed.

Campanaro S, Vezzi A, Vitulo N, et al. (2005) Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains BMC Genomics. 6:122. Pubmed.

Barberis M, Pagano MA, Gioia LD, et al. (2005) CK2 regulates in vitro the activity of the yeast cyclin-dependent kinase inhibitor Sic1 Biochem Biophys Res Commun. 336(4):1040-8. Pubmed.

2004

Pizzo P, Giurisato E, Bigsten A, et al. (2004) Physiological T cell activation starts and propagates in lipid rafts Immunol Lett. 91(1):3-9. Pubmed.

Kojic S, Medeot E, Guccione E, et al. (2004) The Ankrd2 protein, a link between the sarcomere and the nucleus in skeletal muscle J Mol Biol. 339(2):313-25. Pubmed.

Tavano R, Gri G, Molon B, et al. (2004) CD28 and lipid rafts coordinate recruitment of Lck to the immunological synapse of human T lymphocytes J Immunol. 173(9):5392-7. Pubmed.

Zucchi I, Mento E, Kuznetsov VA, et al. (2004) Gene expression profiles of epithelial cells microscopically isolated from a breast-invasive ductal carcinoma and a nodal metastasis Proc Natl Acad Sci USA. 101(52):18147-52. Pubmed.

2003

Toppo S, Cannata N, Fontana P, et al. (2003) TRAIT (TRAnscript Integrated Table): a knowledgebase of human skeletal muscle transcripts Bioinformatics. 19(5):661-2. Pubmed.

Romualdi C, Campanaro S, Campagna D, et al. (2003) Pattern recognition in gene expression profiling using DNA array: a comparative study of different statistical methods applied to cancer classification Hum Mol Genet. 12(8):823-36. Pubmed.

Tombola F, Campello S, De Luca L, et al. (2003) Plant polyphenols inhibit VacA, a toxin secreted by the gastric pathogen Helicobacter pylori FEBS Lett. 543(1-3):184-9. Pubmed.

Michelucci R, Poza JJ, Sofia V, et al. (2003) Autosomal dominant lateral temporal epilepsy: clinical spectrum, new epitempin mutations, and genetic heterogeneity in seven European families Epilepsia. 44(10):1289-97. Pubmed.

2002

There are no papers.

2001

Cobellis G, Missero C, Simionati B, et al. (2001) Immediate early genes induced by H-Ras in thyroid cells Oncogene. 20(18):2281-90. Pubmed.

Montecucco C, De Bernard M, Papini E, Zoratti M. (2001) Helicobacter pylori vacuolating cytotoxin: cell intoxication and anion-specific channel activity Curr Top Microbiol Immunol. 257:113-29. Pubmed.

Valle LD, Negrisolo E, Patarnello P, et al. (2001) Sequence comparison and phylogenetic analysis of fish nodaviruses based on the coat protein gene Arch Virol. 146(6):1125-37. Pubmed.

Tombola F, Morbiato L, Del Giudice G, et al. (2001) The Helicobacter pylori VacA toxin is a urea permease that promotes urea diffusion across epithelia J Clin Invest. 108(6):929-37. Pubmed.

Torroni A, Rengo C, Guida V, et al. (2001) Do the four clades of the mtDNA haplogroup L2 evolve at different rates? Am J Hum Genet. 69(6):1348-56. Pubmed.

Tombola F, Pagliaccia C, Campello S, et al. (2001) How the loop and middle regions influence the properties of Helicobacter pylori VacA channels Biophys J. 81(6):3204-15. Pubmed.

Morbiato L, Tombola F, Campello S, et al. (2001) Vacuolation induced by VacA toxin of Helicobacter pylori requires the intracellular accumulation of membrane permeant bases, Cl(-) and water FEBS Lett. 508(3):479-83. Pubmed.

2000

Benna C, Scannapieco P, Piccin A, et al. (2000) A second timeless gene in Drosophila shares greater sequence similarity with mammalian tim Curr Biol. 10(14):R512-3. Pubmed.

Tombola F, Del Giudice G, Papini E, Zoratti M. (2000) Blockers of VacA provide insights into the structure of the pore Biophys J. 79(2):863-73. Pubmed.

Capozzo C, Sartorello F, Dal Pero F, et al. (2000) Gene disruption and basic phenotypic analysis of nine novel yeast genes from chromosome XIV Yeast. 16(12):1089-97. Pubmed.

1999

Faulkner G, Pallavicini A, Formentin E, et al. (1999) ZASP: a new Z-band alternatively spliced PDZ-motif protein J Cell Biol. 146(2):465-75. Pubmed.

1998

Bortoluzzi S, Rampoldi L, Simionati B, et al. (1998) A comprehensive, high-resolution genomic transcript map of human skeletal muscle Genome Res. 8(8):817-25. Pubmed.

1997

Valle G, Faulkner G, De Antoni A, et al. (1997) Telethonin, a novel sarcomeric protein of heart and skeletal muscle FEBS Lett. 415(2):163-8. Pubmed.

1996

Lanfranchi G, Muraro T, Caldara F, et al. (1996) Identification of 4370 expressed sequence tags from a 3'-end-specific cDNA library of human skeletal muscle by DNA sequencing and filter hybridization Genome Res. 6(1):35-42. Pubmed.

1995

There are no papers.

1994

There are no papers.

1993

There are no papers.

1992

There are no papers.

1991

Lanfranchi G, Odorizzi S, Laveder P, Valle G. (1991) Different globin messenger RNAs are present before and after the metamorphosis in Lampetra zanandreai Dev Biol. 145(2):367-73. Pubmed.